STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM76022.1Outer membrane receptor proteins, mostly Fe transport. (804 aa)    
Predicted Functional Partners:
SHM55933.1
TonB protein C-terminal.
   
  0.566
SHM67779.1
Outer membrane transport energization protein TonB.
   
  0.566
SHM77642.1
Outer membrane transport energization protein TonB.
   
  0.566
SHN08526.1
TonB protein C-terminal.
   
  0.566
SHN11283.1
Outer membrane transport energization protein TonB.
   
  0.566
SHN20588.1
Hypothetical protein.
   
  0.566
SHN16281.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.483
SHM45159.1
Hypothetical protein.
  
     0.477
SHN21993.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.477
SHM81219.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.443
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.