STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM80254.1Protein of unknown function. (101 aa)    
Predicted Functional Partners:
SHM80219.1
Bacteroides conjugation system ATPase, TraG family.
 
   
 0.874
SHM80157.1
Bacteroides conjugative transposon TraJ protein.
 
   
 0.866
SHM80125.1
Bacteroides conjugative transposon TraK protein.
 
   
 0.865
SHM80185.1
Protein of unknown function.
 
   
 0.863
SHM80032.1
Bacteroides conjugative transposon TraM protein.
 
   
 0.860
SHM79995.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.855
SHM79930.1
Protein of unknown function.
 
   
 0.845
SHM79966.1
Conjugative transposon protein TraO.
 
     0.845
SHM80382.1
Cellulose biosynthesis protein BcsQ.
 
     0.792
SHM80581.1
Helicase conserved C-terminal domain-containing protein; Manually curated.
 
     0.791
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.