STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM80711.1DNA topoisomerase-3. (694 aa)    
Predicted Functional Partners:
SHM80740.1
Protein of unknown function.
 
 
 
 0.961
SHM80581.1
Helicase conserved C-terminal domain-containing protein; Manually curated.
 
 
 0.893
recQ
ATP-dependent DNA helicase RecQ.
 
 
 0.877
recQ-2
ATP-dependent DNA helicase RecQ.
 
 
 0.874
SHM83085.1
ATP-dependent DNA helicase RecQ.
 
 
 0.863
SHM80767.1
Helix-turn-helix domain-containing protein.
 
     0.850
SHM80678.1
ORF6N domain-containing protein.
 
     0.844
SHM80451.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
 
 
 0.752
SHM79930.1
Protein of unknown function.
  
     0.727
SHM79966.1
Conjugative transposon protein TraO.
  
     0.724
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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