STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM96377.1Hypothetical protein. (350 aa)    
Predicted Functional Partners:
SHM96339.1
Hypothetical protein.
 
     0.893
SHL54460.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
  0.708
SHL68926.1
Protein of unknown function.
  
     0.677
SHM96312.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.577
SHL58676.1
Signal transduction histidine kinase.
    
 0.573
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family.
       0.553
gldI
Protein involved in gliding motility GldI.
  
     0.548
SHM10392.1
Hypothetical protein; Manually curated.
  
     0.542
purN
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase.
   
    0.487
SHM13520.1
Surface antigen.
  
     0.472
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.