STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN06216.1Hypothetical protein. (175 aa)    
Predicted Functional Partners:
SHM98839.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
   
 
 0.938
SHN06236.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
      0.859
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.845
SHN06254.1
Protein of unknown function.
 
     0.839
SHN06269.1
RNA:NAD 2'-phosphotransferase, TPT1/KptA family.
 
     0.835
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.809
SHN06199.1
Adenylosuccinate synthase.
 
     0.794
SHN06185.1
Hypothetical protein.
 
     0.748
SHM43721.1
SWIM zinc finger.
  
     0.576
SHL44898.1
Saccharopine dehydrogenase NADP binding domain-containing protein.
  
     0.554
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.