Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM01635.1 | SHM16538.1 | SAMN05444387_1708 | SAMN05444387_2092 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Single-strand binding protein. | 0.602 |
SHM01635.1 | polA | SAMN05444387_1708 | SAMN05444387_2170 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.918 |
SHM01635.1 | recJ | SAMN05444387_1708 | SAMN05444387_4080 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Exonuclease RecJ. | 0.604 |
SHM01635.1 | ssb | SAMN05444387_1708 | SAMN05444387_1428 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Single-strand binding protein. | 0.617 |
SHM16538.1 | SHM01635.1 | SAMN05444387_2092 | SAMN05444387_1708 | Single-strand binding protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.602 |
SHM16538.1 | dprA | SAMN05444387_2092 | SAMN05444387_1527 | Single-strand binding protein. | DNA processing protein. | 0.490 |
SHM16538.1 | polA | SAMN05444387_2092 | SAMN05444387_2170 | Single-strand binding protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.690 |
SHM16538.1 | priA | SAMN05444387_2092 | SAMN05444387_0695 | Single-strand binding protein. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.856 |
SHM16538.1 | recJ | SAMN05444387_2092 | SAMN05444387_4080 | Single-strand binding protein. | Exonuclease RecJ. | 0.659 |
SHM16538.1 | ssb | SAMN05444387_2092 | SAMN05444387_1428 | Single-strand binding protein. | Single-strand binding protein. | 0.919 |
SHN09776.1 | SHN09798.1 | SAMN05444387_4078 | SAMN05444387_4079 | Proline iminopeptidase. | Predicted arabinose efflux permease, MFS family. | 0.773 |
SHN09776.1 | recJ | SAMN05444387_4078 | SAMN05444387_4080 | Proline iminopeptidase. | Exonuclease RecJ. | 0.773 |
SHN09798.1 | SHN09776.1 | SAMN05444387_4079 | SAMN05444387_4078 | Predicted arabinose efflux permease, MFS family. | Proline iminopeptidase. | 0.773 |
SHN09798.1 | recJ | SAMN05444387_4079 | SAMN05444387_4080 | Predicted arabinose efflux permease, MFS family. | Exonuclease RecJ. | 0.794 |
dprA | SHM16538.1 | SAMN05444387_1527 | SAMN05444387_2092 | DNA processing protein. | Single-strand binding protein. | 0.490 |
dprA | recJ | SAMN05444387_1527 | SAMN05444387_4080 | DNA processing protein. | Exonuclease RecJ. | 0.626 |
dprA | ssb | SAMN05444387_1527 | SAMN05444387_1428 | DNA processing protein. | Single-strand binding protein. | 0.528 |
mutL | mutS | SAMN05444387_3174 | SAMN05444387_3531 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.998 |
mutL | polA | SAMN05444387_3174 | SAMN05444387_2170 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.996 |
mutL | priA | SAMN05444387_3174 | SAMN05444387_0695 | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.593 |
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