Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL30621.1 | SHM95219.1 | SAMN05444387_0279 | SAMN05444387_3559 | Aspartate aminotransferase. | Aspartate aminotransferase. | 0.921 |
SHL30621.1 | SHN10892.1 | SAMN05444387_0279 | SAMN05444387_4151 | Aspartate aminotransferase. | Prephenate dehydratase. | 0.923 |
SHL30621.1 | SHN10916.1 | SAMN05444387_0279 | SAMN05444387_4153 | Aspartate aminotransferase. | Prephenate dehydrogenase. | 0.918 |
SHL30621.1 | SHN10926.1 | SAMN05444387_0279 | SAMN05444387_4154 | Aspartate aminotransferase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.684 |
SHL30621.1 | aroA | SAMN05444387_0279 | SAMN05444387_4160 | Aspartate aminotransferase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.510 |
SHL30621.1 | hisC | SAMN05444387_0279 | SAMN05444387_1280 | Aspartate aminotransferase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.922 |
SHM95219.1 | SHL30621.1 | SAMN05444387_3559 | SAMN05444387_0279 | Aspartate aminotransferase. | Aspartate aminotransferase. | 0.921 |
SHM95219.1 | SHN10892.1 | SAMN05444387_3559 | SAMN05444387_4151 | Aspartate aminotransferase. | Prephenate dehydratase. | 0.988 |
SHM95219.1 | SHN10916.1 | SAMN05444387_3559 | SAMN05444387_4153 | Aspartate aminotransferase. | Prephenate dehydrogenase. | 0.918 |
SHM95219.1 | SHN10926.1 | SAMN05444387_3559 | SAMN05444387_4154 | Aspartate aminotransferase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.684 |
SHM95219.1 | aroA | SAMN05444387_3559 | SAMN05444387_4160 | Aspartate aminotransferase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.510 |
SHM95219.1 | hisC | SAMN05444387_3559 | SAMN05444387_1280 | Aspartate aminotransferase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.918 |
SHN10892.1 | SHL30621.1 | SAMN05444387_4151 | SAMN05444387_0279 | Prephenate dehydratase. | Aspartate aminotransferase. | 0.923 |
SHN10892.1 | SHM95219.1 | SAMN05444387_4151 | SAMN05444387_3559 | Prephenate dehydratase. | Aspartate aminotransferase. | 0.988 |
SHN10892.1 | SHN10903.1 | SAMN05444387_4151 | SAMN05444387_4152 | Prephenate dehydratase. | Aspartate/methionine/tyrosine aminotransferase. | 0.928 |
SHN10892.1 | SHN10916.1 | SAMN05444387_4151 | SAMN05444387_4153 | Prephenate dehydratase. | Prephenate dehydrogenase. | 0.980 |
SHN10892.1 | SHN10926.1 | SAMN05444387_4151 | SAMN05444387_4154 | Prephenate dehydratase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.993 |
SHN10892.1 | aroA | SAMN05444387_4151 | SAMN05444387_4160 | Prephenate dehydratase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.814 |
SHN10892.1 | aroC | SAMN05444387_4151 | SAMN05444387_2291 | Prephenate dehydratase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.776 |
SHN10892.1 | aroK | SAMN05444387_4151 | SAMN05444387_3422 | Prephenate dehydratase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.721 |
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