STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN13781.1Lysophospholipase L1. (407 aa)    
Predicted Functional Partners:
SHN13767.1
alpha-N-arabinofuranosidase.
 
  
  0.868
SHN13806.1
Glycosyl hydrolase family 115.
 
 
   0.816
SHN13818.1
Glucuronoarabinoxylan endo-1,4-beta-xylanase.
 
     0.661
SHN13793.1
Enterochelin esterase.
 
     0.647
SHL66000.1
Glycosyl hydrolase family 12.
  
  0.600
SHM44371.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.582
SHN22187.1
Rhamnogalacturonan endolyase.
  
  0.571
SHN13659.1
Glycosyl hydrolases family 43.
 
  
  0.568
SHN13588.1
Alpha-glucuronidase.
 
     0.512
SHN13629.1
Endo-1,4-beta-xylanase.
 
  
  0.511
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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