STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN14476.1Arabinogalactan endo-1,4-beta-galactosidase. (365 aa)    
Predicted Functional Partners:
SHN14487.1
Arabinogalactan endo-1,4-beta-galactosidase; Manually curated.
 
    
0.820
SHN14466.1
Protein of unknown function.
 
    0.627
SHL22583.1
Endo-1,4-beta-xylanase.
  
  
  0.604
SHN14500.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
     0.600
SHN14455.1
Starch-binding associating with outer membrane.
 
    0.589
SHN05825.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.556
SHN13842.1
Beta-xylosidase.
  
  
  0.538
SHN13818.1
Glucuronoarabinoxylan endo-1,4-beta-xylanase.
  
  
  0.530
SHL99730.1
Arabinan endo-1,5-alpha-L-arabinosidase.
  
  
  0.526
SHN14443.1
Iron complex outermembrane recepter protein.
 
     0.516
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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