STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN15395.1Uncharacterized conserved protein PhnB, glyoxalase superfamily. (139 aa)    
Predicted Functional Partners:
SHN15369.1
Protein of unknown function.
 
     0.810
SHN15382.1
DinB superfamily protein.
 
     0.797
SHN15419.1
DoxX-like family protein.
 
    0.724
SHN15407.1
Hypothetical protein.
 
     0.698
SHM48254.1
Glyoxylase, beta-lactamase superfamily II.
  
 
  0.588
SHL72694.1
Catechol 2,3-dioxygenase.
  
 
 0.528
SHL58422.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.498
SHL72500.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.490
thiE
Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
    
  0.457
SHM19238.1
Thiamine-phosphate pyrophosphorylase.
    
  0.457
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.