STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN19225.1TonB-linked outer membrane protein, SusC/RagA family. (1199 aa)    
Predicted Functional Partners:
SHN19236.1
SusD family protein.
 
     0.941
SHN19248.1
Thiol-disulfide isomerase or thioredoxin.
 
     0.839
SHN14788.1
SusD family protein.
  
     0.773
SHM47181.1
SusD family protein.
  
     0.744
SHN18427.1
SusD family protein.
  
     0.741
SHN19214.1
FecR family protein.
 
    0.716
SHN05664.1
Starch-binding associating with outer membrane.
  
     0.655
SHN11283.1
Outer membrane transport energization protein TonB.
  
  0.634
SHM77642.1
Outer membrane transport energization protein TonB.
  
  0.623
SHN19260.1
Hypothetical protein.
 
     0.606
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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