Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM52449.1 | SHN21360.1 | SAMN05444387_2720 | SAMN05444387_4703 | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | Phosphate starvation-inducible protein PhoH. | 0.484 |
SHM52449.1 | SHN21371.1 | SAMN05444387_2720 | SAMN05444387_4704 | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | Hypothetical protein. | 0.806 |
SHM52449.1 | recO | SAMN05444387_2720 | SAMN05444387_3957 | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.503 |
SHM52449.1 | rsfS | SAMN05444387_2720 | SAMN05444387_0604 | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.843 |
SHM52449.1 | ybeY | SAMN05444387_2720 | SAMN05444387_1537 | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.502 |
SHN21360.1 | SHM52449.1 | SAMN05444387_4703 | SAMN05444387_2720 | Phosphate starvation-inducible protein PhoH. | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | 0.484 |
SHN21360.1 | SHN21371.1 | SAMN05444387_4703 | SAMN05444387_4704 | Phosphate starvation-inducible protein PhoH. | Hypothetical protein. | 0.638 |
SHN21360.1 | cdd | SAMN05444387_4703 | SAMN05444387_2109 | Phosphate starvation-inducible protein PhoH. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.534 |
SHN21360.1 | clpX | SAMN05444387_4703 | SAMN05444387_3512 | Phosphate starvation-inducible protein PhoH. | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.546 |
SHN21360.1 | cmk | SAMN05444387_4703 | SAMN05444387_4483 | Phosphate starvation-inducible protein PhoH. | Cytidylate kinase. | 0.520 |
SHN21360.1 | era | SAMN05444387_4703 | SAMN05444387_3735 | Phosphate starvation-inducible protein PhoH. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.560 |
SHN21360.1 | mfd | SAMN05444387_4703 | SAMN05444387_1738 | Phosphate starvation-inducible protein PhoH. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.468 |
SHN21360.1 | recO | SAMN05444387_4703 | SAMN05444387_3957 | Phosphate starvation-inducible protein PhoH. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.751 |
SHN21360.1 | rsfS | SAMN05444387_4703 | SAMN05444387_0604 | Phosphate starvation-inducible protein PhoH. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.656 |
SHN21360.1 | ybeY | SAMN05444387_4703 | SAMN05444387_1537 | Phosphate starvation-inducible protein PhoH. | rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.847 |
SHN21371.1 | SHM52449.1 | SAMN05444387_4704 | SAMN05444387_2720 | Hypothetical protein. | Nicotinamide-nucleotide amidase; Belongs to the CinA family. | 0.806 |
SHN21371.1 | SHN21360.1 | SAMN05444387_4704 | SAMN05444387_4703 | Hypothetical protein. | Phosphate starvation-inducible protein PhoH. | 0.638 |
SHN21371.1 | cmk | SAMN05444387_4704 | SAMN05444387_4483 | Hypothetical protein. | Cytidylate kinase. | 0.466 |
cdd | SHN21360.1 | SAMN05444387_2109 | SAMN05444387_4703 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Phosphate starvation-inducible protein PhoH. | 0.534 |
cdd | era | SAMN05444387_2109 | SAMN05444387_3735 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.795 |
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