STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN21509.1Glycosyl Hydrolase Family 88. (391 aa)    
Predicted Functional Partners:
kduI
4-deoxy-L-threo-5-hexulose uronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.696
SHN21500.1
Starch-binding associating with outer membrane.
 
     0.692
SHN21520.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.688
SHN18063.1
Protein of unknown function.
 
     0.643
SHN21488.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.633
SHM65839.1
alpha-L-rhamnosidase.
 
  
  0.630
SHN16055.1
Gluconate 5-dehydrogenase.
  
     0.585
SHM66527.1
Alpha-L-rhamnosidase N-terminal domain-containing protein.
  
  
  0.478
SHN21468.1
Hypothetical protein.
 
  
  0.429
SHN21478.1
Two component regulator propeller.
  
     0.414
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.