STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL26730.1Membrane dipeptidase. (356 aa)    
Predicted Functional Partners:
SHL26707.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
     0.939
SHL26623.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
    0.805
SHL26679.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
       0.726
SHL26650.1
2-dehydro-3-deoxygluconokinase.
  
    0.690
SHL26597.1
Gnt-I system high-affinity gluconate transporter.
 
   
 0.570
SHL26572.1
Starch-binding associating with outer membrane.
 
     0.505
SHL26543.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.471
SHL53119.1
Metal binding domain of Ada.
  
     0.413
SHM50749.1
Hypothetical protein.
  
     0.410
SHM57060.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
    0.405
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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