STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL27181.1PD-(D/E)XK nuclease superfamily protein. (930 aa)    
Predicted Functional Partners:
SHL27270.1
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).
 
  
 0.931
SHL72509.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
   
  0.850
SHL86022.1
Protein of unknown function.
  
     0.719
SHL27215.1
Thrombospondin type 3 repeat-containing protein.
       0.677
SHM75090.1
Lipopolysaccharide-assembly.
  
     0.648
SHM03453.1
Family of unknown function.
 
     0.610
SHM03673.1
Hypothetical protein.
  
     0.596
SHL49453.1
Surface antigen.
 
     0.585
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.532
SHM71073.1
DNA polymerase-3 subunit epsilon.
  
    0.522
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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