STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL34301.1Membrane-bound lytic murein transglycosylase D. (611 aa)    
Predicted Functional Partners:
SHM03239.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.870
SHL34273.1
Protein of unknown function.
 
 
 0.855
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
   
  0.839
SHM64113.1
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
   
  0.839
SHL37598.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.792
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
 0.759
SHM38719.1
Signal transduction histidine kinase.
  
  
 0.747
SHM18923.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
  0.679
SHM01960.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.672
SHM91351.1
Hypothetical protein; Belongs to the LOG family.
 
 
  0.626
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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