STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL42362.1Uncharacterized iron-regulated membrane protein. (371 aa)    
Predicted Functional Partners:
SHM39043.1
Iron complex outermembrane recepter protein.
 
    0.680
SHM13179.1
Iron complex outermembrane recepter protein.
 
    0.662
SHL79138.1
Iron complex outermembrane recepter protein.
 
    0.653
SHL50863.1
Sulfite reductase (ferredoxin).
     
 0.650
SHL42422.1
Hypothetical protein.
       0.621
SHL42393.1
Uncharacterized iron-regulated membrane protein.
       0.601
SHL42447.1
Hypothetical protein.
       0.581
SHL79799.1
Iron complex outermembrane recepter protein.
 
    0.485
SHL51304.1
Protein of unknown function.
 
    0.424
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.