STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL42531.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
SHL46631.1
Protein of unknown function.
  
     0.691
SHL23633.1
ENT domain-containing protein.
  
     0.659
SHM79987.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.630
SHM60402.1
Hypothetical protein.
  
     0.617
SHL42505.1
2-oxoglutarate dehydrogenase E1 component.
       0.616
SHM50638.1
Uncharacterized membrane protein.
  
     0.613
SHL42562.1
Hypothetical protein.
       0.603
SHM11931.1
LETM1-like protein.
  
     0.603
SHM55678.1
Protein of unknown function.
  
     0.590
SHM64191.1
Hypothetical protein.
  
     0.585
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.