STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL43531.1Multidrug resistance efflux pump. (429 aa)    
Predicted Functional Partners:
SHL43502.1
ATP-binding cassette, subfamily B.
 
 0.991
SHL43408.1
Vitamin K epoxide reductase family protein.
 
     0.840
SHL43565.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain.
       0.631
SHL43600.1
CarboxypepD_reg-like domain-containing protein.
       0.631
SHM43670.1
Outer membrane protein, cobalt-zinc-cadmium efflux system.
  
  0.627
SHL80009.1
Outer membrane protein TolC.
  
 0.624
SHL80036.1
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.624
SHL32828.1
Outer membrane protein, multidrug efflux system.
   
  0.571
SHL42717.1
Outer membrane protein TolC.
   
  0.571
SHL45916.1
Outer membrane protein TolC.
   
  0.571
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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