STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL44334.1DNA polymerase III, alpha subunit. (1532 aa)    
Predicted Functional Partners:
SHL34681.1
DNA polymerase-3 subunit delta'.
   
 0.999
SHL72357.1
DNA polymerase III, delta subunit.
  
 0.999
SHM43166.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 0.999
SHM19028.1
DNA polymerase-3 subunit epsilon.
   
 0.963
SHL82762.1
DNA polymerase-3 subunit epsilon.
    
 0.951
SHM71073.1
DNA polymerase-3 subunit epsilon.
  
 0.930
SHL70692.1
DNA polymerase-3 subunit epsilon.
    
 0.925
SHM72332.1
DNA polymerase-3 subunit epsilon.
   
 0.907
SHM06253.1
DNA polymerase III, alpha subunit.
  
0.898
SHM71047.1
DNA polymerase III, alpha subunit.
  
0.897
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.