STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL46387.1Predicted transcriptional regulator. (123 aa)    
Predicted Functional Partners:
SHL46423.1
BlaR1 peptidase M56.
 
 
 0.987
SHL67172.1
BlaR1 peptidase M56.
 
 
 0.931
SHL67229.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.930
SHL76766.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
 0.782
SHL67204.1
Predicted transcriptional regulator.
  
  
 
0.733
SHL67259.1
Predicted transcriptional regulator.
  
  
 
0.728
SHM32749.1
Hypothetical protein.
  
  
 0.592
SHM33057.1
Cu2+-exporting ATPase.
  
  
 0.592
SHL46350.1
Hypothetical protein.
 
     0.579
SHM57616.1
Protein of unknown function.
 
  
 0.463
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.