STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL47584.1Glycerophosphoryl diester phosphodiesterase. (225 aa)    
Predicted Functional Partners:
SHL47532.1
Phosphoglycolate phosphatase.
   
   0.832
SHL47565.1
Hypothetical protein.
       0.830
SHL47498.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
 
  0.797
SHL84595.1
Glycerophosphoryl diester phosphodiesterase.
  
  
 
0.721
SHL92432.1
Aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.619
SHL47466.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.605
SHM61363.1
4-alpha-L-fucosyltransferase glycosyl transferase group 56.
  
  
 0.602
SHL47430.1
Hypothetical protein.
 
     0.545
SHL47354.1
Hypothetical protein.
 
     0.529
SHL47614.1
Alpha-amylase.
       0.456
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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