STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL48906.1Antitoxin component YwqK of the YwqJK toxin-antitoxin module. (316 aa)    
Predicted Functional Partners:
SHM01960.1
WD40-like Beta Propeller Repeat.
 
 
 
 0.863
SHM64756.1
Biopolymer transport protein ExbD.
 
   0.858
SHM53741.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
 0.853
SHM83575.1
Hypothetical protein.
   
 
 0.840
SHM39241.1
TonB-dependent receptor.
  
 
 0.825
SHM39336.1
TonB-dependent receptor.
  
 
 0.825
SHL22376.1
Outer membrane transport energization protein ExbD.
 
   0.819
SHL22356.1
Outer membrane transport energization protein ExbD.
  
   0.792
SHL67012.1
Biopolymer transport protein ExbD/TolR.
  
   0.792
SHL67034.1
Biopolymer transport protein ExbD/TolR.
  
   0.792
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.