STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL50544.1O-succinylhomoserine sulfhydrylase. (390 aa)    
Predicted Functional Partners:
SHL50437.1
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
 
 
 0.970
SHM72363.1
Cystathionine beta-synthase.
 
 0.969
SHL50475.1
Aspartate kinase.
  
 
 0.939
SHL86931.1
Cystathionine beta-synthase.
 
 0.927
SHL50368.1
Homoserine dehydrogenase.
  
 
 0.916
metE
Methionine synthase (B12-independent); Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
  
 
 0.882
SHL51007.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 
 0.871
SHL86291.1
Aspartate kinase.
  
 
 0.857
SHL88088.1
Cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 0.815
SHL88063.1
Serine O-acetyltransferase.
 
 
 0.792
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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