STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL52772.1Hypothetical protein. (294 aa)    
Predicted Functional Partners:
SHL52742.1
Starch-binding associating with outer membrane.
 
     0.926
SHL52715.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.906
SHL52883.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
  0.738
SHL52687.1
Regulatory protein, luxR family.
 
    0.645
SHL80009.1
Outer membrane protein TolC.
  
 
   0.641
SHL26400.1
Hypothetical protein.
  
     0.622
SHL52802.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
 
     0.574
SHL91592.1
Carbohydrate family 9 binding domain-like.
  
     0.513
SHL46564.1
3-phytase.
  
     0.506
SHM02356.1
Chitinase, GH18 family.
     
 0.505
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.