STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL53693.1Hypothetical protein. (889 aa)    
Predicted Functional Partners:
SHL53661.1
GLPGLI family protein.
 
     0.901
SHL53602.1
GLPGLI family protein.
 
     0.761
SHL50172.1
GLPGLI family protein.
 
     0.758
SHL53579.1
GLPGLI family protein.
 
     0.751
SHL43860.1
GLPGLI family protein.
  
     0.742
SHL43893.1
GLPGLI family protein.
  
     0.736
SHM31698.1
GLPGLI family protein.
 
     0.593
SHM84614.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.570
SHL52742.1
Starch-binding associating with outer membrane.
  
 
   0.558
SHL44265.1
GLPGLI family protein.
  
     0.553
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.