Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL49150.1 | SHL49178.1 | SAMN05444366_0902 | SAMN05444366_0903 | Rod shape determining protein RodA; Belongs to the SEDS family. | Penicillin-binding protein 2. | 0.986 |
SHL49150.1 | SHL49235.1 | SAMN05444366_0902 | SAMN05444366_0905 | Rod shape determining protein RodA; Belongs to the SEDS family. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.929 |
SHL49150.1 | SHL75604.1 | SAMN05444366_0902 | SAMN05444366_1446 | Rod shape determining protein RodA; Belongs to the SEDS family. | Rod shape-determining protein MreB. | 0.812 |
SHL49150.1 | SHM76208.1 | SAMN05444366_0902 | SAMN05444366_4076 | Rod shape determining protein RodA; Belongs to the SEDS family. | Cell division protein FtsI (penicillin-binding protein 3). | 0.917 |
SHL49150.1 | ftsA | SAMN05444366_0902 | SAMN05444366_4068 | Rod shape determining protein RodA; Belongs to the SEDS family. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.501 |
SHL49150.1 | ftsZ | SAMN05444366_0902 | SAMN05444366_4067 | Rod shape determining protein RodA; Belongs to the SEDS family. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.595 |
SHL49178.1 | SHL49150.1 | SAMN05444366_0903 | SAMN05444366_0902 | Penicillin-binding protein 2. | Rod shape determining protein RodA; Belongs to the SEDS family. | 0.986 |
SHL49178.1 | SHL49235.1 | SAMN05444366_0903 | SAMN05444366_0905 | Penicillin-binding protein 2. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.982 |
SHL49178.1 | SHL75604.1 | SAMN05444366_0903 | SAMN05444366_1446 | Penicillin-binding protein 2. | Rod shape-determining protein MreB. | 0.861 |
SHL49178.1 | SHM76208.1 | SAMN05444366_0903 | SAMN05444366_4076 | Penicillin-binding protein 2. | Cell division protein FtsI (penicillin-binding protein 3). | 0.930 |
SHL49178.1 | ftsA | SAMN05444366_0903 | SAMN05444366_4068 | Penicillin-binding protein 2. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.718 |
SHL49178.1 | ftsZ | SAMN05444366_0903 | SAMN05444366_4067 | Penicillin-binding protein 2. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.456 |
SHL49235.1 | SHL49150.1 | SAMN05444366_0905 | SAMN05444366_0902 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Rod shape determining protein RodA; Belongs to the SEDS family. | 0.929 |
SHL49235.1 | SHL49178.1 | SAMN05444366_0905 | SAMN05444366_0903 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Penicillin-binding protein 2. | 0.982 |
SHL49235.1 | SHL75604.1 | SAMN05444366_0905 | SAMN05444366_1446 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Rod shape-determining protein MreB. | 0.961 |
SHL49235.1 | SHM76208.1 | SAMN05444366_0905 | SAMN05444366_4076 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Cell division protein FtsI (penicillin-binding protein 3). | 0.831 |
SHL49235.1 | ftsZ | SAMN05444366_0905 | SAMN05444366_4067 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.466 |
SHL49235.1 | secF | SAMN05444366_0905 | SAMN05444366_4316 | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | Protein translocase subunit secF /protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.639 |
SHL55037.1 | SHL75604.1 | SAMN05444366_1108 | SAMN05444366_1446 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Rod shape-determining protein MreB. | 0.587 |
SHL55037.1 | SHM79344.1 | SAMN05444366_1108 | SAMN05444366_4190 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Trigger factor. | 0.640 |
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