STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL90044.1RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)    
Predicted Functional Partners:
SHL66708.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.772
SHL29998.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.765
SHL24574.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.762
SHM76591.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.762
SHL68165.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.758
SHM07298.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.721
SHL90949.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.714
SHL90014.1
Hypothetical protein.
       0.661
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.650
SHM04317.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.633
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.