STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL90075.1Glycosyl hydrolases family 16. (252 aa)    
Predicted Functional Partners:
SHL90121.1
Hypothetical protein.
     0.791
SHL90152.1
Starch-binding associating with outer membrane.
 
     0.786
SHL90183.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.784
SHL90212.1
Y_Y_Y domain-containing protein.
 
     0.726
SHL84595.1
Glycerophosphoryl diester phosphodiesterase.
 
      0.697
SHL90102.1
Beta-glucanase, GH16 family.
 
    
0.602
SHL84787.1
Hypothetical protein.
 
     0.412
SHL90044.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.403
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.