STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM02476.1TonB-linked outer membrane protein, SusC/RagA family. (1011 aa)    
Predicted Functional Partners:
SHM02441.1
Susd and RagB outer membrane lipoprotein.
   
 0.963
SHL26572.1
Starch-binding associating with outer membrane.
   
 0.775
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
 
   
 0.698
SHL75514.1
Starch-binding associating with outer membrane.
   
 0.678
SHM02381.1
Hexosaminidase.
 
   
 0.672
SHM02503.1
Histidine kinase.
 
   
 0.651
SHL22329.1
Outer membrane transport energization protein TonB.
  
   0.603
SHM59031.1
Outer membrane transport energization protein TonB.
  
   0.580
SHM41567.1
Starch-binding associating with outer membrane.
  
     0.575
SHM73905.1
Starch-binding associating with outer membrane.
  
     0.571
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.