STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM04346.1Phospholipase A1. (273 aa)    
Predicted Functional Partners:
SHM04160.1
linoleoyl-CoA desaturase.
    
  0.745
SHL83220.1
Beta-barrel assembly machine subunit BamD.
    
   0.742
SHL28048.1
NTE family protein.
    
 0.730
SHL53314.1
NTE family protein.
    
 0.730
SHL76927.1
Surface antigen.
  
 
   0.680
SHL49453.1
Surface antigen.
    
   0.615
SHL81489.1
Surface antigen.
    
   0.615
SHM19122.1
Hypothetical protein.
    
   0.615
SHM63497.1
Hypothetical protein.
    
   0.615
SHM73169.1
Outer membrane protein assembly factor BamA.
    
   0.615
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.