STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM06009.1Phage/plasmid-like protein TIGR03299. (356 aa)    
Predicted Functional Partners:
SHM05980.1
PRTRC system protein E.
 
     0.897
SHM06036.1
Single-strand DNA-binding protein.
 
     0.892
SHM05945.1
PRTRC system protein C.
 
     0.889
SHM05890.1
PRTRC system protein B.
 
     0.881
SHM05864.1
PRTRC system ThiF family protein.
 
     0.880
SHM52395.1
Single-strand DNA-binding protein.
 
     0.760
SHM05707.1
Bacteroides conjugative transposon TraM protein.
  
     0.718
SHM05765.1
Conjugative transposon protein TraO.
  
     0.713
SHM05734.1
Bacteroides conjugative transposon TraN protein.
  
     0.679
SHM05800.1
Protein of unknown function.
  
     0.669
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.