STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM08614.1Nitrate/nitrite transport system permease protein. (295 aa)    
Predicted Functional Partners:
SHM08646.1
Nitrate/nitrite transport system substrate-binding protein.
 
 
 0.999
SHM08582.1
Bicarbonate transport system ATP-binding protein/nitrate/nitrite transport system ATP-binding protein.
 
 
 0.990
SHM08746.1
Assimilatory nitrate reductase (NADH) beta subunit /assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.926
SHL37148.1
Polar amino acid transport system ATP-binding protein.
 
 
 0.812
SHL69655.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
  
 
 0.709
SHM08214.1
Nitrite reductase (NADH) large subunit.
 
  
 0.497
SHL79108.1
Probable oxidoreductase, LLM family.
  
 
 0.481
SHM70353.1
Luciferase family oxidoreductase, group 1.
  
 
 0.481
SHM08686.1
Alginate export.
       0.441
SHL53821.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
 
  0.401
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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