STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM10499.1Hypothetical protein. (175 aa)    
Predicted Functional Partners:
SHL70127.1
Acetyltransferase (GNAT) family protein.
 
 
 
  0.801
SHL84839.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.697
SHM87266.1
Glutamate synthase (NADH) large subunit.
   
 
 0.658
SHL23123.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.655
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.508
SHM10528.1
Hypothetical protein; Belongs to the LOG family.
       0.496
SHM10467.1
6-phosphogluconolactonase, cycloisomerase 2 family.
       0.437
SHM53684.1
N-acetylhexosamine 1-kinase.
    
   0.422
SHL26761.1
Transcriptional regulator, DeoR family.
    
   0.407
SHM34276.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.