STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM11650.1DNA-binding transcriptional regulator, MarR family. (152 aa)    
Predicted Functional Partners:
SHM11675.1
3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.710
SHM03673.1
Hypothetical protein.
  
     0.626
SHM11707.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.500
SHM80401.1
Cytochrome C oxidase subunit IV.
  
     0.484
SHM11733.1
Acyl-CoA dehydrogenase.
 
 
  0.471
SHL83023.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
     0.435
SHM11623.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
       0.431
SHL40486.1
Protein of unknown function.
  
     0.419
SHM77344.1
Methyltransferase domain-containing protein.
  
     0.410
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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