STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM12744.1Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. (711 aa)    
Predicted Functional Partners:
SHM12802.1
Sugar (pentulose or hexulose) kinase.
 
 
 0.968
SHM12772.1
L-rhamnose isomerase / sugar isomerase.
 
  
  0.966
SHM41984.1
Amino acid adenylation domain-containing protein.
  
 0.854
SHM42013.1
Amino acid adenylation domain-containing protein.
  
 0.852
SHL39303.1
L-ribulose 5-phosphate 4-epimerase.
  
 
 0.830
SHM87266.1
Glutamate synthase (NADH) large subunit.
     
 0.796
SHM11675.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.794
SHM12714.1
L-rhamnose-H+ transport protein.
 
     0.780
SHM13612.1
Xylulokinase.
  
 
 0.776
SHM35077.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
  
 
 0.776
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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