STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM19788.1FKBP-type peptidyl-prolyl cis-trans isomerase. (153 aa)    
Predicted Functional Partners:
SHM59975.1
Molecular chaperone HtpG.
   
 0.862
SHM80594.1
Protein involved in gliding motility SprA.
    
   0.817
SHM77450.1
Protein of unknown function.
    
 
 0.751
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.705
SHL52570.1
Long-chain fatty acid transport protein.
    
 
 0.657
SHM89223.1
Hypothetical protein.
    
 
 0.657
SHL50437.1
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
  
  0.648
SHL74845.1
PRC-barrel domain-containing protein.
    
   0.617
SHL50368.1
Homoserine dehydrogenase.
   
  0.601
SHL50475.1
Aspartate kinase.
   
  0.601
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.