STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM29588.1TonB-linked outer membrane protein, SusC/RagA family. (1029 aa)    
Predicted Functional Partners:
SHM29614.1
Starch-binding associating with outer membrane.
 
     0.941
SHM29648.1
SusE outer membrane protein.
 
     0.914
SHM29680.1
Predicted alpha-1,6-mannanase, GH76 family.
 
     0.789
SHL91653.1
Starch-binding associating with outer membrane.
  
     0.749
SHM73905.1
Starch-binding associating with outer membrane.
  
     0.726
SHM41567.1
Starch-binding associating with outer membrane.
  
     0.686
SHL29125.1
SusD family protein.
  
     0.657
SHL47888.1
Starch-binding associating with outer membrane.
  
     0.627
SHM09144.1
Starch-binding associating with outer membrane.
  
     0.623
SHM83860.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.612
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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