STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM29821.1alpha-L-rhamnosidase. (895 aa)    
Predicted Functional Partners:
SHM29680.1
Predicted alpha-1,6-mannanase, GH76 family.
 
     0.646
SHM29790.1
Alpha-glucosidase.
       0.639
SHM29707.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
 
  0.611
SHM29854.1
MFS transporter, sugar porter (SP) family; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.596
SHM12744.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   0.592
SHM29648.1
SusE outer membrane protein.
 
     0.554
SHM29765.1
Alpha-1,2-mannosidase, putative.
 
     0.551
SHL66389.1
Glucose-1-phosphate adenylyltransferase.
   
    0.530
SHM41010.1
alpha-L-fucosidase.
  
     0.513
SHM13017.1
alpha-L-rhamnosidase.
 
     0.508
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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