STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM30878.1ATPase family associated with various cellular activities (AAA). (245 aa)    
Predicted Functional Partners:
SHM30817.1
GntR family transcriptional regulator / MocR family aminotransferase.
 
     0.719
SHM30904.1
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.682
SHM30845.1
Hypothetical protein.
       0.648
SHM41037.1
GLPGLI family protein.
  
     0.557
SHL37148.1
Polar amino acid transport system ATP-binding protein.
  
     0.527
SHL44966.1
Putative ABC transport system ATP-binding protein.
  
     0.438
SHL27154.1
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component.
  
     0.423
SHM65187.1
Putative ABC transport system ATP-binding protein.
  
     0.419
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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