STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM31456.1Hypothetical protein. (704 aa)    
Predicted Functional Partners:
SHL28904.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
  0.785
SHL52883.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
  0.785
SHM12898.1
Por secretion system C-terminal sorting domain-containing protein.
   
  0.785
SHM17537.1
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
  0.785
SHM42047.1
Por secretion system C-terminal sorting domain-containing protein.
   
  0.785
SHM31586.1
N-terminal ig-like domain of cellulase.
   
  0.676
SHM31642.1
N-terminal ig-like domain of cellulase.
   
  0.676
SHM32524.1
Heparinase II/III-like protein.
   
  0.676
SHM19331.1
Undecaprenyl-phosphate galactose phosphotransferase/putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
    
  0.661
SHL78477.1
Carbohydrate binding domain-containing protein.
    
   0.582
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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