STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM33407.1Hypothetical protein. (1227 aa)    
Predicted Functional Partners:
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.724
SHM21915.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.718
SHL83475.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.536
SHM15122.1
Abi-like protein.
  
  
 0.485
SHM37956.1
Transcriptional regulatory protein, C terminal.
  
     0.485
SHL52287.1
AsmA protein.
  
     0.450
SHM84276.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
    0.425
SHM85608.1
Metalloenzyme superfamily protein.
  
     0.411
SHL91676.1
Arylsulfotransferase (ASST).
  
     0.400
SHM20135.1
PepSY-associated TM region.
  
     0.400
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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