STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM36066.1Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (479 aa)    
Predicted Functional Partners:
SHM36323.1
Lysophospholipase L1.
  0.925
SHM36195.1
Unsaturated rhamnogalacturonyl hydrolase.
     0.911
SHM36220.1
Unsaturated rhamnogalacturonyl hydrolase.
     0.894
SHM36170.1
Protein of unknown function.
 
     0.867
SHM36270.1
Pectinesterase.
 
  
 0.860
SHM36143.1
Acetyl esterase/lipase.
 
  
 0.837
SHM36119.1
Starch-binding associating with outer membrane.
 
   0.834
SHM36244.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
  0.783
SHM36092.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.742
SHM57468.1
Starch-binding associating with outer membrane.
  
   0.706
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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