STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM36807.1Glycosyl hydrolases family 43. (645 aa)    
Predicted Functional Partners:
SHM36779.1
Alpha galactosidase A.
     0.926
SHL39196.1
Hypothetical protein.
 
     0.781
SHL79222.1
Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family.
   
 0.778
SHL39255.1
alpha-N-arabinofuranosidase.
  
 0.720
SHL42422.1
Hypothetical protein.
  
     0.617
SHL42393.1
Uncharacterized iron-regulated membrane protein.
  
     0.586
SHL39225.1
Arabinan endo-1,5-alpha-L-arabinosidase.
  
     0.540
SHL78477.1
Carbohydrate binding domain-containing protein.
 
  
 0.540
SHM36244.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.509
SHL39101.1
alpha-N-arabinofuranosidase.
 
  
 0.494
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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