Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL79651.1 | SHM39276.1 | SAMN05444366_1585 | SAMN05444366_3124 | DNA-binding transcriptional regulator, MarR family. | Helix-turn-helix domain-containing protein. | 0.447 |
SHM38719.1 | SHM39276.1 | SAMN05444366_3108 | SAMN05444366_3124 | Signal transduction histidine kinase. | Helix-turn-helix domain-containing protein. | 0.702 |
SHM38719.1 | SHM53142.1 | SAMN05444366_3108 | SAMN05444366_3387 | Signal transduction histidine kinase. | AraC-type DNA-binding protein. | 0.780 |
SHM39241.1 | SHM39276.1 | SAMN05444366_3123 | SAMN05444366_3124 | TonB-dependent receptor. | Helix-turn-helix domain-containing protein. | 0.529 |
SHM39276.1 | SHL79651.1 | SAMN05444366_3124 | SAMN05444366_1585 | Helix-turn-helix domain-containing protein. | DNA-binding transcriptional regulator, MarR family. | 0.447 |
SHM39276.1 | SHM38719.1 | SAMN05444366_3124 | SAMN05444366_3108 | Helix-turn-helix domain-containing protein. | Signal transduction histidine kinase. | 0.702 |
SHM39276.1 | SHM39241.1 | SAMN05444366_3124 | SAMN05444366_3123 | Helix-turn-helix domain-containing protein. | TonB-dependent receptor. | 0.529 |
SHM39276.1 | SHM39304.1 | SAMN05444366_3124 | SAMN05444366_3125 | Helix-turn-helix domain-containing protein. | Hypothetical protein. | 0.543 |
SHM39276.1 | SHM53142.1 | SAMN05444366_3124 | SAMN05444366_3387 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.405 |
SHM39276.1 | rpoA | SAMN05444366_3124 | SAMN05444366_3731 | Helix-turn-helix domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.495 |
SHM39304.1 | SHM39276.1 | SAMN05444366_3125 | SAMN05444366_3124 | Hypothetical protein. | Helix-turn-helix domain-containing protein. | 0.543 |
SHM53142.1 | SHM38719.1 | SAMN05444366_3387 | SAMN05444366_3108 | AraC-type DNA-binding protein. | Signal transduction histidine kinase. | 0.780 |
SHM53142.1 | SHM39276.1 | SAMN05444366_3387 | SAMN05444366_3124 | AraC-type DNA-binding protein. | Helix-turn-helix domain-containing protein. | 0.405 |
SHM53142.1 | rpoA | SAMN05444366_3387 | SAMN05444366_3731 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.495 |
rpoA | SHM39276.1 | SAMN05444366_3731 | SAMN05444366_3124 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Helix-turn-helix domain-containing protein. | 0.495 |
rpoA | SHM53142.1 | SAMN05444366_3731 | SAMN05444366_3387 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | AraC-type DNA-binding protein. | 0.495 |