STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM39656.1Cupin domain protein. (136 aa)    
Predicted Functional Partners:
SHM39687.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.800
SHM29648.1
SusE outer membrane protein.
  
     0.652
SHL91676.1
Arylsulfotransferase (ASST).
  
     0.632
SHM39623.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.622
SHL37116.1
NitT/TauT family transport system permease protein.
  
     0.619
SHL91653.1
Starch-binding associating with outer membrane.
  
     0.562
SHM39746.1
Hypothetical protein.
 
     0.528
SHM11816.1
Putative MetA-pathway of phenol degradation.
  
     0.521
SHL78352.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.485
SHM40193.1
Putative lumazine-binding.
  
  
  0.482
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.