STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM40396.1Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (625 aa)    
Predicted Functional Partners:
SHM40484.1
Putative glycosyl hydrolase domain-containing protein.
 
     0.823
SHM13135.1
Hpt domain-containing protein.
   
 
 0.811
SHM40452.1
Carbohydrate family 9 binding domain-like.
 
     0.785
SHM38719.1
Signal transduction histidine kinase.
  
 
 0.744
SHM40422.1
Beta-1,4-mannooligosaccharide/beta-1, 4-mannosyl-N-acetylglucosamine phosphorylase.
 
     0.718
SHL69113.1
L-proline dehydrogenase.
  
  
 0.712
SHM40557.1
Alpha-1,2-mannosidase, putative.
 
     0.667
SHM11017.1
PAS domain S-box-containing protein.
  
 
 0.658
SHM75062.1
Regulatory protein, Fis family.
    
  0.566
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.549
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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