STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM40484.1Putative glycosyl hydrolase domain-containing protein. (360 aa)    
Predicted Functional Partners:
SHM40452.1
Carbohydrate family 9 binding domain-like.
 
     0.951
SHM40422.1
Beta-1,4-mannooligosaccharide/beta-1, 4-mannosyl-N-acetylglucosamine phosphorylase.
 
     0.865
SHM40396.1
Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.823
SHL70968.1
Carbohydrate family 9 binding domain-like.
 
     0.769
SHM40557.1
Alpha-1,2-mannosidase, putative.
 
     0.714
SHM40538.1
Hexosaminidase.
 
     0.608
SHL42393.1
Uncharacterized iron-regulated membrane protein.
  
     0.593
SHL42422.1
Hypothetical protein.
  
     0.554
SHM40366.1
GHKL domain-containing protein.
  
     0.504
SHM84404.1
Hypothetical protein.
  
     0.492
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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