STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM50260.1Tetratricopeptide repeat-containing protein. (588 aa)    
Predicted Functional Partners:
SHM50289.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.971
SHM38719.1
Signal transduction histidine kinase.
  
 0.968
SHM14030.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.883
SHM11017.1
PAS domain S-box-containing protein.
  
 0.832
SHL80249.1
Hypothetical protein.
  
 0.814
SHM50234.1
Tetratricopeptide repeat-containing protein.
 
    
0.787
SHM13135.1
Hpt domain-containing protein.
   
 0.749
SHM38475.1
Methylase of chemotaxis methyl-accepting proteins.
   
 0.742
SHM89112.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.742
SHM76474.1
Two component transcriptional regulator, LuxR family.
  
  0.698
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.