STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM52112.1SusD family protein. (461 aa)    
Predicted Functional Partners:
SHM52081.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.942
SHM52136.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
     0.819
SHM04839.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.774
SHM04979.1
Methylamine utilisation protein MauE.
  
     0.773
SHM52194.1
Methylamine utilisation protein MauE.
  
     0.773
SHM37528.1
Iron complex outermembrane recepter protein.
  
 
   0.669
SHM05044.1
Hypothetical protein.
  
     0.666
SHM07237.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.664
SHL84763.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.636
SHM34076.1
Iron complex outermembrane recepter protein.
  
 
   0.576
Your Current Organism:
Flavobacterium saccharophilum
NCBI taxonomy Id: 29534
Other names: ATCC 49530, CIP 104743, Cytophaga saccharophila, F. saccharophilum, IFO 15944, JCM 8520, LMG 8384, LMG:8384, NBRC 15944, NCIMB 2072, strain 024 Agbo and Moss
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.